Kasper and Nils both use Pure's system functionality in various situations
Pure has a browser-based user-interface. Firefox, Explorer, Safari, and Chrome are supported in Windows and Mac in recent versions. These browser- and platform-combinations are guaranteed to work, and users should not expect errors.
Each user will have at least one role with a certain set of rights. The role will determine what functionality is available and what data can be viewed and edited. Also, the user-interface is adaptive: The user will only see the functionality, that he or she actually has rights to access. To that, roles can be customised to meet local requirements exactly. A standard Roles/Rights-model comes with Pure, however, which tends to match universities well without customisation.
More information roles and rights is available in the Pure4 white-paper.
Workflows can be used to send content from one user for Enrichment and Validation by other users.
There can be one workflow per content-type in Pure; a publication workflow, a project workflow, etc. Each workflow is highly flexible - more than one workflow per content type has never been needed in any Pure project, not even as different organisations have different business processes. Pure comes with a number of standard workflows, which often are used as they are, but Pure's workflow engine makes it perfectly possible to have custom workflows added if necessary.
Tasks are given to Pure-users different situations: Co-authors can be asked to confirm their authorship on publications, or librarians can be asked to validate a publication or a journal. Tasks are shown under My tasks on users' main screen. Messages are available in the user-interface of Pure, but the user can also choose to have messages sent as e-mail as well. Users can have one e-mail per messages or choose to have a daily, weekly, or monthly digest. E-mails contain deep-links that allow direct access into Pure and to the specific piece of content of relevance without logging in.
More information about tasks and messages is available in the Pure4 white-paper.
Pure has a dedicated Integration Platform for exchanging or synchronising data with other systems. Such data exchange is dynamic - when something changes on the other system it will be reflected in Pure. Integrations can be two-way if desired but usually are not.
Pure is almost always integrated with HR-systems for retrieving up-to-date information about Persons and Organisations. Integrations to financial systems are also common; e.g. for retrieving budgets or actual spending for research projects. Pure is often integrated with Student Administration Systems, Grant Management Systems, Authority Lists, or national service-systems. To that, the integration platform is also used for authentication of users with local authentication systems such as LDAPs and Active Directories or through organisations' single sign-on systems. Pure's Integration Platform handles communication with sources using the available interface, and it handles field mapping between Pure's data-model and the external system. Further, it can also handle logical operations; e.g., summarisations.
For integration to bibliometric sources, please see Bibliometrics below. More information is available in the Pure4 white-paper.
| System | Type | Country | Standardised |
| Agresso | Finance | UK | Yes |
| SITS | Student Administration | UK | No |
| SAP | Finance | DE | No |
| Navision | Finance | DK | No |
| ScanPas | HR and authentication | DK | No |
| Kerberos | Authentication | UK, DK | Yes |
| Shibboleth | Authentication | UK, FI | Yes |
| Active Directory | Authentication | UK, DK, SE, FI | Yes |
| CAS | Authentication | DK, UK | Yes |
| Meltwater | Press feed | DK | Yes |
| InfoPaq | Press feed | DK | Yes |
| pFACT | Grants and awards | UK | No |
| ResourceLink | HR and authentication | UK | No |
Some of the systems to which Pure has been integrated previously
Most implementations of Pure require legacy data to be imported; often publications from former publication bases, but it can also be other types of content. Pure's dedicated Legacy Import Framework supports such imports. A specialised file format called PXA is part of the Legacy Import Framework. PXA is short for Pure XML Archive. It is a container-format for metadata, text- and binary files, and relations. The PXA format will always match the data-model in Pure precisely, which allows direct import of legacy data and related full-text into Pure.
Legacy data import is usually carried out as a service by Atira during the implementation project. More information is available in the Pure4 white-paper.
When registering a publication in Pure, users can submit the related full-text documents with the bibliographic metadata. Full-text documents can also be bulk-imported into Pure during legacy import. Full-text documents can be any kind; PDF, Word, and OpenOffice, of course, but also any other text- and binary file type such as sound, movie, drawing, presentation, etc. To that, Pure can make Open Access documents publicly available on either PurePortal or on the institution's own websites depending on rules (e.g. embargo dates, document types, funding bodies, etc), and Pure also comes with direct integration to Sherpa RoMEO and Juliet to make Open Access decisions easier to make.
For more advanced options, Pure can store the full-text documents in a dedicated repository system; DSpace, FEDORA, E-Prints, etc. For more information about this option, please see Repository functionality. Also, more information is also available in the Pure4 white-paper.
Pure has a Web-Service API, which comprises two separate Web-Services. It makes it possible to exhibit content from Pure on the web, and to let other systems retrieve data from Pure. All content in Pure marked for public access is available. Also, own web applications can be programmed against Pure's Web-Service API, which makes it possible to use Pure as an integrated component in a local Service Oriented Architecture or even in a national SOA-based infrastructure.
More information is available under TECH, Web-Services.
Pure comes with two so-called OAI services. One makes it possible to harvest metadata in bulk from outside OAI sources. The other makes it possible to let metadata be harvested from Pure. OAI harvesting is used by authorities in several countries for national assessment exercises and similar projects, where research organisations have data return obligations.
More information is available under TECH, OAI services.
Integration with library systems is facilitated by use of the Z39.50 protocol. It gives users of library systems the option of searching simultaneously in Pure. This is particularly relevant if there is a strong library culture among students, post-grads and researchers.
Field validation means defining rules for submission of content. A basic example of field validation is making the title-field on publications mandatory, but more advanced field validation can also be employed. Validation is specific for content types - making the title fields mandatory for publications doesnt mean it must be mandatory on book contributions, for example.
| Type | Example |
| Simple validation of field value-types | Only numerical values in number-fields |
| Simple validation of field value-types | E-mail addresses must contain one @-sign and at least one .-sign. |
| Validation of field-utilisation by content type | Title is required on a publication |
| Validation of field-utilisation by content type | There must be at least one Author on a publication |
| Conditional field-validation | If a publication is classified “External”, at least one author must be internal |
| Conditional field-validation | classification on a classification scheme must be formatted as a content-type URI if the classification scheme is of the type “Content type classification scheme” |
Examples of field validation options
Pure supports an unlimited number of languages.
The user-interface of Pure is available in English, German, Dutch, Finnish, Swedish and Danish, and it can be made available in any number of additional languages. Also, content can be in specific languages; at Danish universities, for example, Publications must be both Danish and English, while Activities and Projects are Danish-only. Individual fields can also be language-specific: In the Danish case, only some fields are required to be bilingual, not all. The different languages on content are referred to as Primary Language, Secondary Language, etc.
| Country | User-interface | Content |
| Germany | DE, UK | Primary/Secondary: German/English |
| United Kingdom | UK | Primary: English |
| Belgium | NL, UK, DE | Primary/Secondary: Dutch/English |
| Sweden | SE, UK | Primary/Secondary: Swedish/English |
| Finland | FI, UK, SE | Primary/Secondary/Tertiary: Finnish/Swedish/English |
| Denmark | DK, EN | Primary/Secondary: Danish/English |
Existing languages
Eskild, Jakob, and Michael all use Pure's User Functionality
The researchers main screen offers an overview of all personal content including Publications, Activities, Projects, Grant performances, and Bibliometrics. With the UK data-model, also Impact Cases and REF publication candidates can be monitored from here. Any piece of content is immediately clickable for more details, and the main screen offers a list of all actions recently carried out by the researcher.
Researcher can edit and manage own research profiles. Profiles can contain basic name- and contact-information as well as titles, name variations, profile photos, and attached documents. In addition, researchers can add Keywords to the profile. Fixed keywords can be chosen from the Keyword taxonomy in Pure (see Classification editor), and own keywords can be added, too. Profiles can also include an unlimited number of Mini Profiles to describe each of the researchers scientific areas, and the visibility of the profile can be set to public or internal. To that, profiles can include both Thomson-Reuters' ResearcherID and Scopus' Author ID besides the unique identifier in Pure. To that, the ORCID project's identifiers can be included in profiles. Further, all relations are available from a dedicated profile tab: Organisational affiliations, projects, co-authors, funding bodies, and journals that has published the researcher. Finally, the profile contains a complete history of actions by the researcher since becoming a User in Pure.
More information is available in the Pure4 white-paper.
The user can add and edit content according to the CRUD principles: Create, Retrieve, Update, and Delete. When adding something, the user can choose Create from template, which will make an empty template available for a manual submission (see Self-import for submissions by import).
When adding content, the user is guided by help texts and stepwise choosing. There is a template for each type of research output, and each template and each field on each template is documented for the user, offering info about how it should be populated. If the wrong template was used, it is possible to shift template without loosing data. This can be done at any stage in the workflow, allowing templates to be changed by researchers, clerical staff, librarians, or other users.
More information is available in the Pure4 white-paper.
Users can search in Research Output, Activities, and Projects. With the UK datamodel, also Impact Cases can be searched. Along with simple searches, filters can be set up. The user can filter on Time, Persons, Own content, Visibility, Type, and Placement. One filter can contain one or more of these variables - a filter can be for a specific type of content in a specific period, for example (e.g. peer-reviewed journal articles in 2006). To that, searches can be performed when a filter is active, making it even easier to find specific content.
Also, the user can save filters for reuse in other situations - researchers and research managers commonly have a small number of saved filters for often-recurring needs. The result of any search- and/or filtering operation will be a list; e.g. a list of matching publications. The user can export any list in several formats: PDF, Word, Excel, HTML, RIS (Reference Manager), and BibTeX.
Any piece of content in Pure can be someones favourite - a Person, a Publication, a Project, etc. Anything can be marked as a favourite by a simple click on the always-available star icon. Once something has been marked this way, it will be added to the user's collection of such preferred content called My Favourites. Here, a short, graphical overview of all favourites offers single-click access to each item.
This small feature was requested specifically by researchers using Pure for everyday work, and it has since been widely adopted.
Users can choose Create from online source or Import from file to add content to Pure by importing it rather than adding it manually. This functionality is called Self-import because is allows researchers or administrative staff to import publications or other types of content themselves without assistance from database managers, librarians, or other data professionals; but without compromising data quality and consistency. Currently, imports can be made from the following online sources and file formats:
| Source | Description | Standardised | License |
| PubMed | Online source | Yes | Not required |
| Web of Science | Online source | Yes | Required |
| ArXiv | Online source | Yes | Not required |
| Scopus | Online source | Yes | Required |
| BibTex | File source | Yes | Not required |
| RefMan | File source | Yes | Not required |
| RIS | File source | Yes | Not required |
| JournalTOCs | File source | Yes | Not required |
New sources are continuously added, please inquire
The result of an import is a rich publication record in Pure with all bibliographic metadata from the source, correct relations to all internal authors, correct relations to all related organisations (e.g. school, institute, department), correct relations to one or more projects, and all primary journal information (ISSN, publishing date, etc.). If the user wishes, one or more full-text files can be added. Also URLs can be added by the user as can Bibliographic notes and additional relations. With the UK datamodel, Impact cases can be added directly at this point (REF-specific feature), and the user can also decide if the imported publication should be publicly available, or if it should have limited availability.
Requires the Self-import module. Please also see Automated bulk imports below for a description of Pure's bulk-import feature. Finally, more information is available in the Pure4 White-paper.
Pure's CV functionality makes it possible for researchers to create an unlimited number of CVs for different purposes: One for students, one for grant applications, one focusing on esteem, etc. The researcher can let a CV include any individual piece of content; Publications, Projects, Grant performances, Activities and Esteems, Co-authors, Bibliometrics, etc. Each CV can be printed or set to appear online. The latter option will make the CV appear on the researcher's profile page on PurePortal. Criteria can also be defined for a CV; e.g. Include all peer-reviewed publications or Include only cited publications, etc. When criteria is used, CVs will automatically update when new content is added to Pure, which match the criteria.
This ability to manage different CVs and effortlessly print and publish them online was requested by researchers, and it has become an important part of Pure's value-proposition to researchers.
Requires the CV module.
Any user can let another user assume responsibility for him or her for periods of time. This is useful in case of annual leaves, maternity leaves, sickness, travel, and so on: Any task to the first user will automatically be redirected to the assisting user. This functionality is also used in situations, where high-ranking institutional managers with extensive rights in Pure wishes to let administrative staff help out with everyday tasks.
Kirsten, Eskild, and Nils use Pure's Research management and -support functions from different organisational positions
An institution can choose to use Pure's basic award functionality as described below or any external, full-featured pre-award system that it prefers. If an external system is used, integration will be set up with that system in order to continuously have all relevant award data in Pure. That will ensure the ability to query and report on pre-award data in relation with other data in Pure like Publications, Researchers, Departments, etc.
One reason for using Pure's pre-award functionality is that most of the information, which a researcher needs for a grant application, already is in Pure in high data-quality. Another reason is, that researchers are able to access Pure themselves; not all 3rd party award systems can easily be accessed by researchers.
In order to support a researcher in writing an application for funding, Pure can have a special report named after each funding agency or funding programme: RCUK, DFG, FP7, etc. These reports can be maintained by the institution itself: It will be possible for administrators to modify any report and to create new ones according to new and changing requirements from funding organisations.
A researcher or another person making funding applications (e.g. staff from your a funding office) will be able to run the report. By running the report, a Word-file (or other text-editor format) will be generated, which includes all data from Pure, which is relevant on the funding application: Persons, CVs, Organisations, publication lists, previous application successes, other esteem, previous projects, etc. All information will be output to Word (or other text-editor) in the correct order, and the researcher or other person making the funding application will be able to continue working on the application in Word (or other editor text editor).
A funding object can be created in Pure, which will include detailed information about the funding such as funding organisation (relation), programme (relation), amount applied for, description, person- and organisation information (relations), expected outcome, expected project start and end-date, and so on.
The relevant funding organisation can be chosen. The same is true for external organisations, sponsors, etc. What information can be added on the funding object can be customised according to individual requests. The person applying for funding will also be in the funding object by a relation to hit or her profile in Pure (which is a person-object).
The funding object can be in different process-stages (being written, has been submitted, being processed, closed, etc.) and when it is finished, it can be in two different result-categories: Granted or Not Granted.
Funding objects will be subject to appropriate security measures in Pure.
It is possible to integrate Pure with one or more financial systems, costing systems, an/or pre- and post-award systems. Such integration will facilitate:
The setup above will leave pure financial reporting to the financial system, but it will facilitate reporting in Pure, which combines applications, successes, amounts, funding sources, internal applications and their organisations with research outputs such as publications, patents, activity results, impacts, etc.
Please note that while the pre-award datamodel concept are ready for use, parts of Pures pre-award functionality has not yet been released.
More information is available in the Pure4 white-paper.
Content created by one user can be enriched or validated by one or more other users: An incomplete publication from a researcher can be completed by administrative staff, for example, or administrative staff can create a publication, which then can be validated by the researcher. Other examples with other types of content would be valid too - projects or esteem, for example, or the complex internal deliberations that will precede returns the national assessment exercises such as the REF in the UK. This is all achieved using Pure's Workflows.
Enrichment or validation is usually done by a user with the Editor-role (see Roles and Rights), also referred to simply as Editors. Wherever there is a workflow, there will also be an Editor. If your Pure-system has a Publication-workflow, you will also have a Publication Editor. Several users within an organisation can be editors, and editors can be appointed at any level in the organisational hierarchy; e.g., university, school, faculty, institute, department, etc. One editor can also have responsibilities for several or all organisations, if desired. More complex workflows can also be set up involving multiple workflow-steps and multiple roles.
Detailed rules can determine what is required before a piece of content is allowed to the next step in the workflow, and messages can be sent with every workflow-step to clarify what the next role is expected to do, or to explain what a previous role will have to rectify.
More information is available in the Pure4 white-paper.
Normally, a piece of content that had already been validated through a workflow would be locked - the originating user would not be able to edit it anymore. The rationale is that once content is approved, it should not be altered. However, Administrators can turn on Pure's Revalidation feature. It allows the originating user to change any value on the content in question; in case of a publication the title, abstract, author-list, etc. Once changed, Pure will automatically send the publication through the same workflow it went through the first time, and the same personnel will validate it again. To make it easy for the other users to re-validate the content, it is clearly marked as being revalidated, and the actual changes are shown in red.
Please also see Additional system settings under Administrator functionality.
Using Pure's Reporting module, it is possible to report on all content in Pure: Publications, Projects, Activities, Organisations, Persons, Journals, Publishers, External Organisations, Users, Impact cases, and so on. Reports can include lists, tables, analyses, and graphs. Detailed filtering criteria can be defined for each list, table, analysis, or graph: Citations can be used as criteria when creating a list of publications, for example, the number of research students can be used when calculating a number of researchers, or publication types can be used when creating a graph about output from a specific organisation. Further, lists and analysis can be grouped differently. A publication list can be grouped by Year, for example, by Authors, or by Organisation. To that, mathematical functions can be set for analyses. All options for filtering, grouping, and setting functions are presented to the user, when the report is being made.
One report can contain multiple lists, analysis and graphs about any number of content types. They will just be represented as multiple sections in the finished report. This is also referred to as compound reports. An example would be that one report could include a) a list of Persons from a specific Organisation, b) then a table showing publication types by authors, c) then an analysis of citations per author over time, and d) finally a graph showing Peer-reviewed publications versus non-reviewed.
You can set relevant output formats for each content type. For Publication lists, for example, you can choose HARVARD, Vancouver, CBE, MLA, etc. For graphs, different chart types can be chosen. To that, all reports can be output as PDF-files, as HTML for viewing on-screen only, for further use in Word and Excel and similar desktop application.
| Format | Description | Standardised |
| | General output format, used when distributing reports automatically to recipients | Yes |
| HTML | For viewing on-screen | Yes |
| RTF | Rich Text Format, used for working with the reporting result in Word, OpenOffice, Pages, etc. | Yes |
| CSV | Comma Separated Values, used for working with the reporting result in Excel, OpenOffice, Numbers, etc. | Yes |
Report output formats
Users can make all-new reports, or they can copy and modify existing reports and save them with another name. Reports can be kept personal or made available for other user. If made available to others, they must have a short description added in the relevant user languages.
132.53 Kb , PDF format
A report can be scheduled to run at a specified date and time. It can also be set to run with regular intervals; weekly, monthly, quarterly, etc. Further, a report can have a recipient list set up; a list of e-mail addresses and names whereto the report automatically will be distributed when it has run. These are useful features in many situations; supplying research managers with regular status information, for example.
Finally, reporting is subject to the same Roles/Rights model and the same content access strategies in Pure, which regulate all content access in other situations as well. This means that users will have only access to run a report if they also have sufficient access to the content that the report would include. This is checked before the user even sees the report: Users will only see reports they can run.
Among other things, Malene and Anne Marya manage keyword taxonomies, handle dupliactes, and run bulk-imports
Pure uses several measures to avoid duplicates in the first place. It is not possible to import a publication twice from Web of Science or PubMed, for example. Further, Pure has functionality for finding and showing duplicate Publications, Publishers, and Journals, and for deleting or merging duplicate objects.
When merging, one of the objects in the duplicate set is chosen to be the destination of the merge operation. It is normally the one with the best data, that is chosen as destination. Empty fields on the destination object will automatically be populated with values from the same fields on the non-destination objects, if they have any values.
The result of the merge operation in this example is one publication, which is uniquely identified in Pure, which holds all data from all former duplicates, and which is correctly related to all other objects in Pure (e.g. Persons (authors), Projects, Organisations, etc.).
To summarise, Pure automatically avoids duplicates where possible, it provides both manual and automated identification of duplicates, and it facilitates clean-up of duplicates by delete- and merge-operations.
More information about this subject is available in the Pure4 white-paper.
With the Self-import module, bulk imports can be set up to run automatically from the modules supported sources:
The purpose is to regularly and automatically import the bibliographic records, which belong to the organisation. The desired source or sources must be selected, and an import interval must be set for each of these sources. Pure will then analyse each source according to the criteria and import new bibliographic records with the desired intervals. Once imported, the records can be left in Pure as they are, or they can be enriched and validated in a workflow by specified users in Pure.
Requires the Self-import module. More information about this subject is available in the Pure4 white-paper.
| Source | Bulk import | Standardised | License |
| PubMed | Yes | Yes | Not required |
| Web of Science | Yes | Yes | Required |
| ArXiv | Yes | Yes | Not required |
| Scopus | Yes | Yes | Required |
| BibTex | No | Yes | Not required |
| RefMan | No | Yes | Not required |
| JournalTOCs | No | Yes | Not required |
Automated bulk import can be set up from these sources
Classifications are values that will appear in drop-down menus or selection boxes for users to chose from. They are arranged in classification schemes. One purpose of using classifications is to replace free-text options for improved data quality, improved consistency, and improved user-interaction. Another is to facilitate the use of fixed vocabularies where appropriate according to institutional policies.
It is possible to set up a central taxonomy or keyword list describing the institution's research areas and disciplines. Such a taxonomy can be hierarchical, and it can include unlimited values at each level. It can be one of the standard ones such as Dewey or Ortelius, or it can be proprietary for the institution; written at the library, for example. Users can add values from such a central taxonomy to anything in Pure - publications, projects, person profiles, etc.
Content that was tagged from a fixed taxonomy can be browsed hierarchically by keywords on PurePortal or on own Pure-fed web pages. This is particularly useful for guests coming from outside the university environment; private sector companies, the media, etc. Further, such keywords can be used as criteria in Reports. This is true both with system classifications and self-defined classifications.
Pure's classification editor allows all classifications to be managed by relevant staff members independently of consultants. Administrators or librarians typically do this. They can create new classifications, delete existing classifications, and change, and merge classifications. Whenever existing classifications are changed, Pure will automatically reclassify existing content in the database accordingly.
More information about this subject is available in the Pure4 white-paper.
As described in Roles and Rights above, Publishers and Journals are managed in Pure by Global Editors: Users with special rights to create, edit, and delete these two content types.
Specialised press monitoring agencies in Europe and the UK offer a service, by which press clippings about universities and similar institutions are gathers and provided as an XML data feed. If an institution subscribes to such a feed, it is possible to have Pure automatically import press clippings and relate them to the researchers, publications, schools/faculties/institutes/departments, or projects that is mentioned. The benefit is, that press clippings become an integrated part of Pure's data set, allowing web exhibition of press clippings (e.g. showing all of a researcher's press on his or her profile) and reporting about press coverage (e.g. which researcher/school/institute/department/project is most in the press, which media covers the institution best or worst).
Requires the Press Clippings module. More information is also available in the Pure4 white-paper.
Functionality in Pure allows submission of student theses through PurePortal or through a web form on the institutions own web pages or a student internet. Date- and time-stamped certification can be sent to a student administration system verifying the submission, and both metadata and full-text can be used in reports or made publicly available online. Relations will exist between a student thesis and the professors supervising the student, which allows reporting or online listing of theses per professor. Students' submissions can be validated in a workflow involving their professors and/or administrative staff at the student administration office.
Not relevant with all standard data-models. Requires the Student Theses module. More information is also available in the Pure4 white-paper.
Nils and Kasper administrate users, and they overview and plan synchronisations with other systems by use of Pure's Systems Integration Management tools
Administrators manage users in Pure.
Users can be created or deleted, roles and rights can be assigned and revoked, etc. This work is done by administrators in the administrator section of Pure's user-interface.
Users can be created automatically by the integration to the HR system, and depending on the HR system, roles and rights can also be assigned automatically. Alternatively, administrators can manage users manually from within the user-interface of Pure.
During implementation, integrations are set up in Pure with each external system necessary for full production. Usually, integrations are set up with systems for synchronisation of data such as Organisations, Persons, Projects, or Students, but also External Organisations, and Persons as well as Publishers and Journals can come from outside systems (please also see Systems integration). Functionally in Pure's administration section is available for managing these integrations: Administrators can schedule integration jobs, monitor, stop and start jobs, revert to previous stages, access and analyse job performance logs, and set so-called safeSizes for each job.
More information is also available in the Pure4 white-paper.
All events by all users are systematically logged in Pure. Creating, retrieving, changing, deleting, viewing, or reporting on content is logged as well as any use of functionality. Users' IDs are logged with a timestamp as well as information about the action carried out. If content is changed, the actual change is also logged. If a project title is changed, for example, the log will show the title before and after for that content ID, what user made the change, at what time it was made, and by what event type (change content in this case). Administrators can filter Pures audit log, and several filters can be active simultaneously:
| Filter by | Description |
| User ID | Show all events by that user |
| Content ID | Show all events carried out on specific content |
| Event type | Show all events of a specific type; e.g. “delete” |
| Time period | Show all events within a specific period |
| Free text searching | Search the log by free text |
Administrators' Audit log filtering options
Pure comes with a number of default system messages (please see Tasks and messages). Administrators can change system messages to meet new requirements, and administrators can also set up new system messages for new situations and they can send messages ad hoc for different purposes. Text resources is a common term describing all help pages, context-sensitive help texts, and all use of text in the user-interface (e.g. field-labels). All Pure's text resources can be modified by administrators. Administrators can also create new help-pages and context-sensitive help pop-ups, depending on local needs. Finally, Pure's main Error Page can be modified by Administrators. The main Error Page is shown when Pure is not available; for example during planned downtime for service-work.
More information about this subject is available in the Pure4 white-paper.
Administrators can look up any user in the entire system and assume his or her role. The result is, that the administrator's screen will look like the assumed user role and offer the administrator the ability to interact with Pure just as the assumed user role would be able to. This is also called supporting the user. When the administrator is done, he or she will leave support-mode whereby the normal administrator screen will reappear. This feature is practical for a number of purposes, including actual live support of users in need of guidance. Help-desk staff at larger institutions is usually granted the ability to perform such support operations, which makes it possible for the user requesting support to sit back and view a specific operation being carried out by support staff while listening to them on the telephone.
A small but practical administration feature in Pure is the ability to temporarily allow guest users in the system. External users can request access. Administrators will be notified, and they can then either authorise or reject the request. If the request is authorised, the administrators will determine how the guest user is granted access by setting one or more roles and one or more organisations for the guest user. Guest access can be set to automatically expire after a certain period and can also easily be prolonged or made permanent.
Additional system settings can be managed by administrators, five are described briefly below:
Functionality is available for managing the Self-import sources in Pure; sources like Web of Science, Scopus, ArXiv, PubMed, etc. Some sources require virtually no management, while others require setting of Web-Service URLs, setting of authentication information, etc. For Web of Science, specifically, a search URL can be set, an authentication URL can be set, and the Edition to be accessed can be specified (e.g. SCI, SSCI, AHCI, ISTP). Please see Self-import and Automated bulk imports for a full description of Pure's Self-import functionality. Pure's re-indexing feature makes on-demand re-indexing available for administrators from the System settings menu. Further, Pure's sending of e-mail is set up and handled by administrators here; reply-to address, host, port, and a dedicated Pure support-mail address can be set.
To that, The basic PurePortal (see Portal functionality) can be managed by administrators. It can be turned on or off, and a number of other settings can be managed. Finally, Pure's feature for revalidation can be turned on or off by administrators. Many Pure-owners prefer to have it turned off for most of the year, but prefer to set it to on during busy periods where many publications are submitted.
Malene imports impact factors and citations and combine with other info in Pure for reporting purposes
Bibliometricians and managers with similar responsibilities have dedicated functionality available in Pure:
Impact factors can be imported and placed onto Journals in Pure. Matching is done by ISSN numbers. Impact factor data can be exported from Thomson-Reuters' Journal Citation Report (JCR) with a valid license and access to the Web of Knowledge. Exported impact factor data can then be imported by Pure. This can be done as often as preferred: Journals in Pure that already have this information will just be updated, and a log will be kept showing what was updated and when.
| Field | Description |
| Year | Citation data imported from the Web of science(Thomson-Reuters) |
| Total number of citations | |
| Self citations | |
| Source | The source of the citation set |
| Date of bibliometric processing | The data the citation set was added |
Citation information on publications
Based on a relevant contract with Thomson-Reuters, citation data can also be exported from Web of Science and imported into Pure. Citation data is available for export as the number of citations per year per article. In this case, citation data sets are matched to publications in Pure by Thomson-Reuters publication identifier (UT).
| Field | Description |
| Year | Year of impact |
| Source | The source of the impact factor data |
| Cited Half-Life | Impact factor data imported from the Web of science (Thomson-Reuters) |
| Diacron Impact Factor | |
| Immediacy Index | |
| Local Impact Factor | |
| Syncronous Impact Factor | |
| Imported | The data the citation set was added |
Impact factor information on journals
Finally, when importing bibliographic records from Thomson-Reuters Web of Science using Pure's Self-import functionality, citation data will be imported simultaneously. If a publication is imported from WoS that is already in Pure but does not have a UT-number on it, it is possible to merge the two publications using Pure's Duplicate handling tools. A destination-object is pointed out by the user, and the merge operation will result in a new object with the best information from the two previous ones. Pure will automatically update objects with any links to the two old publications so that they instead link with the new one. Similar functionality is available with Scopus and other data suppliers and sources.
More information about this subject is available in the Pure4 white-paper.
It is possible to analyse content in Pure by bibliometric data. That is possible when citations and Impact factors have been imported and matched properly to relevant content objects in Pure such as Publications and Journals. Content such as Persons, Projects and Grants can also be analysed by bibliometrics, because this content is related to Publications and Journals. Comparing publications from specific funding bodies by their citation count would be perfectly possible, for example, as would ranking internal authors by the different metrics.
Concretely, Pure supports bibliometricians' work with the ability to set up and run Reports, which analyses bibliometric data or cross-references it with bibliographical data and expresses the results in lists, tables, calculations, and graphs. Such analytical results can be exported as PDF or XML, or as data for further use in Word or Excel. Along with that, bibliometricians can use Pure's Search, filter, list, and export functionality for defining and saving subsets of data.
Please note that bibliometric data from 3rd party suppliers can be subject to usage limitations.
The number of times a publication has been downloaded is a relatively new metric but increasingly requested. Download data can come from several sources: Publishers' electronic journals, Open Access electronic journals, institutional repositories, subject-specific repositories, national repositories, and portals, researchers own web pages, and so on.
In Pure, download metrics are being stored for all publication-types as well as for activities and any other type of content where something would be downloadable; e.g., binary files such as pictures, movies, or sound. It is possible to store the download numbers along with information about their source. This makes it possible to differentiate the weighting of downloads depending on the sources. Download numbers can be imported into Pure just as other bibliometric data. Importing is possible from files and from Web-Services or other online interfaces. Pure will automatically add download numbers from PurePortal if a PurePortal-based website exists. They will be stored with PurePortal as the listed source of origin.
Like with other metrics, download numbers can be used as criteria when analysing other data in Pure. It is possible rank publications by their downloads, for example, but download numbers can also be used as a part in more complex and advanced analyses.
Pure comes with standard support for integration with InCites from Thomson-Reuters. This includes data returns.
The following description is specific for the Research Assessment Exercise (REF) in the UK as specified by HEFCE. For more information about assessment support outside of the UK, please see the Pure4 white-paper or contact us. Pure also supports the national Danish assessment programme, DASTI's so-called Indicator Project, and the Flemish government's FRIS programme. These programmes are very different, and they are supported in different ways by Pure.
Pure supports each of the REF-concepts as defined by HEFCEs second consultation. The starting point is the Units of Assessment as defined by HEFCE:
| Panel | Units of Assessment |
| Panel A | 1. Clinical Medicine 2. Public Health, Health Services and Primary Care 3. Allied Health Professions, Dentistry and Nursing 4. Psychology, Psychiatry & Neuroscience 5. Biological Sciences 6. Pre-clinical, Human Biological and Sports Science 7. Agriculture, Veterinary and Food Science |
| Panel B | 8. Earth Systems and Environmental Sciences 9. Chemistry 10. Physics 11. Mathematics & Statistics 12. Computer Science and Informatics 13. Engineering |
| Panel C | 14. Geography and Environmental Studies 15. Architecture, Built Environment, Town & Country Planning 16. Economics and Econometrics 17. Business and Management Studies 18. Law 19. Politics and International Studies 20. Social Work and Social Policy & Administration 21. Sociology & Anthropology |
| Panel D | 22. Education 23. Area Studies 24. European Languages and Studies 25. English Language and Literature 26. Philosophy, Theology and Religious Studies 27. History, Archaeology and Classics 28. Art and Design 29. Music, Drama, Dance and Performing Arts 30. Library, Information, Communication, Cultural and Media Studies |
REF2013 Units of Assessment
These 30 Units of Assessment are available in Pure as a classification scheme, which makes it easy for administrators to manage them, change them as they evolve, limit them to the ones actually needed locally, etc. Units of Assessment are one of six key REF concepts in Pure. The others are described in the table below:
| Concept | Description |
| Assessment Organisation | A virtual organisation in Pure, which matches one Unit of Assessment as defined by HEFCE. An Assessment Organisation called “10 - Physics” for example, could represent output from researchers from different departments of physics at the university. |
| Impact Statement | An Impact Statement contains a narrative statement about the impact of the research activities that are being submitted. An unlimited number of documents can be attached (binary and text) in support of the narrative. |
| Impacts | An Impact is the individual researcher’s account of specific impact as a result of specific research activities. Relations can be made between the Impact itself and other Impacts, Research outputs, and Activities and Projects. |
| Assessment Person | An Assessment Person contains information about one researcher for the REF return. It is related to that researcher in Pure. Only one relation with one researcher is possible. |
| Assessment Environment | Assessment Environments are related to Assessment Organisations in order to describe the research environment in that assessment area as required for REF. |
REF2013 concept per HEFCE's 2nd consultation as implemented in Pure
These concepts have been carefully incorporated into Pure; both at datamodel level, in terms of supporting functionality, regarding reporting capabilities, and in Pures exhibition interfaces (Web-Service API, OAI).
A number of tasks must be carried out in Pure in order for an organisation to be ready for data submission by the REF census date. These tasks are carried out by three roles:
| Role | Description |
| Personal User | Personal Users (i.e. researchers) have two duties in relation with REF: They must nominate their REF output candidates, and they must add their REF Impacts. |
| Assessment Editor | An Assessment Editor is an Organisational role with responsibility for the REF return for one organisation at the university: Typically for a school/faculty or a larger institute. |
| Assessment Administrator | An Assessment Administrator is a global role in Pure with responsibility for the REF return for the entire university. One or more persons can be Assessment Administrators. |
REF-specific user-roles in Pure per HEFCE's 2nd consultation
Researchers will nominate their REF candidates among all their research outputs. It is done by simply adding a check mark to the outputs in question. A commentary can be added for each candidate output. Researchers will also add their Impacts; short statements as described in the table above, which can be selected by Assessment Editors for the necessary Impact Statements to be submitted for each Unit of Assessment.
Assessment Editors will set up an Assessment Organisation for the Unit of Assessment whereto they wish to submit. Assessment Editors will also administrate and monitor incoming REF candidate outputs from the researchers and decide whether they are rejected or approved for REF. To that, Assessment Editors will also add the necessary Impact statements and Assessment Environments to the Assessment Organisation.
Assessment Administrators will examine the completed Assessment Organisations when they are ready from the Assessment Editors. They might return one or more of them to the Editors for improvements while adding their suggestions or other comments, but ultimately the Assessment Administrators will approve the Assessment Organisations to be returned for each of the Units of Assessment, and the REF return will be ready.
Assessment Administrators have tools at their disposal for these examinations and decisions. Pures Units of Assessment report offers a view of what would be returned for each Units of Assessment order by Assessment Organisations. Also, Assessment Organisations can be compared in reports that include detailed table-views of output types, impacts, environments, and persons per Assessment Organisation, and reports can show both the gross contribution to the total return by individual physical organisations (schools, institutes, departments) and the contribution normalised by number of employees or total funding.
Each REF content type can be subject to a workflow. Using workflows with REF content is particularly relevant with Impacts, Impact Statements, and Assessment Environments, because these are complex pieces of content with much information on them. Workflows can be used to collaboratively improve or enrich pieces of content to be in the REF return, to validate submissions or parts thereof, and to announce when content is ready for submission. They are also helpful in case of last minute changes; if personnel were to leave shortly before the census date, for example. Some examples are available in the table below:
| Example | Description |
| 1 | A Researcher can tentatively send a near-completed Impact to an Assessment Editor for review and comments. |
| 2 | An Assessment Editor can return an Impact to the originating Researcher suggesting additional argumentation or strengthened evidence, for example. |
| 3 | An Assessment Editor can tentatively submit the near-completed Assessment Organisation to an Assessment Administrator for review and comments. |
| 4 | An Assessment Editor can submit the completed Assessment Organisation to the Assessment Administrator for approval. |
REF workflow user stories
An important benefit from using workflows on REF content is, that important decisions about REF submission can be reviewed by more persons in addition to the one person making the initial decision.
All relevant parts of the entire REF production flow are kept confidential as appropriate.
Assessment Editors can write internal notes for each researcher and output candidate, and not this nor any of the other internal deliberations leading up to the REF return will be available to the researchers themselves or any other users in Pure apart from Assessment Editors and Assessment Administrators. For obvious reasons, such discretion is essential in a CRIS system dealing with REF content, and the architecture of Pure as well as the implementation of the REF concepts mentioned above has been designed specifically to ensure this discretion.
As per May 2010, we are still only at HEFCE's 2nd consultation. One among several things yet not clarified is the format and technology of the physical return itself. It is not known whether printed reports or data in a specific format will be required. Regardless of what interface and data format HEFCE will prefer, it will be supported in Pure as standard, if that is not already the case.
More information about this subject is available in the Pure4 white-paper.
The development of basic REF-support in Pure is finished. The resulting datamodel-extensions and functionality have been tested, it has been approved by multiple UK HEIs, and it has been released. In its current standing, Pure is fully able to support UK HEIs in replying to the REF. However, additional REF-related functionality has been scheduled for development in 2010. Assessment Editors' tasks will be automated to a further extend, main-screens for Assessment Editors and Administrators will be improved to make it easier to look over and contemplate results at preliminary stages, and the selection of REF-specific reports available to Editors and Administrators will be extended.
More information about this subject is available in the Pure4 white-paper.
Pure supports depositing and maintaining publication metadata and full-text files in 3rd party repository systems based on a configurable set of rules. The basic functionality is the same for all repository systems, but the individual feature sets vary according to the difference in the individual systems. Pure does not communicate with the repository by means of its Integration Platform, but by means of so-called repository connectors. A connector is an integrated part of Pure with specific functionality for the repository systems it facilitates integration with. A number of different connectors are available for different repository systems:
| Repository | Integration method | Status |
| DSpace | Pure connector | Available |
| FEDORA | Pure connector | In development |
| E-prints | Pure connector | Available |
| Equella | Pure connector | Available |
Repository systems to which Pure integrates directly
The short history of CRIS systems makes the best practise description for integration between CRISs and repository systems both short and rare. That is also the reason why much of Pures repository functionality is developed in collaboration with repository managers at the different installation sites - and the reason why we are happy to listen to further suggestions. The currently available standard functionality in Pure for supporting integrations with repositories is summarised in the table below:
| Functionality | Description |
| Deposit | Deposit a publication to one or more repositories or to different collections within the same repository. |
| Control deposition | Control deposition based on a expressive configuration system with an extensible filter architecture (see table below). |
| Support of license agreements | Support for acceptance of license agreements by end users through Pure: Licenses are presented for acceptance in Pure when a user deposits a file. |
| Asynchronous deposition | Asynchronous deposition of files in repository systems: The user will not have to wait for a publication to be deposited in the repository after upload but can continue working while Pure silently deposits the publication. |
Repository functionality
Currently, publication deposition can be configured using the following filters:
| Filter | Description |
| Classifications | Publications classified as being about science goes into one collection, while economic publications goes into another. |
| Embargo date | Files/publications are only transferred to DSpace when an embargo date is passed. |
| Limited visibility | Publications uploaded to PURE can be marked as having limited visibility (there are several degrees of visibility available). |
| Type filter | Articles in one collection, books in another. |
| Organisation filter | Distribute publications to collections based on organisational ownership. |
| Workflow filter | Control the deposit of publications according to the current workflow stage in PURE. |
Filtering options
Please note, that the filtering model is easily extended to accommodate specific customer requirements. Also please note, that the availability of these features depends on the available functionality in the repository system - not all features will be available with all repository systems.
PurePortal is a website for automatic exhibition of content from Pure. It requires no maintenance or management from the institution. Further, it can be deployed instantly. PurePortal facilitates public access to whatever content in Pure has been marked for public availability. Typically that would be researcher profiles, outputs, projects, events, collaborations, etc. Such access is highly relevant for stakeholders like the press, private sector businesses, undergraduates, and other interested parties. PurePortal can also make full-text available (see Full-text and Repository functionality). It can do that itself or by pointing to files on a Repository system.
Also, PurePortal will make content available for organic Google and similar search engines, and it will make content available for Google Scholar. This aspect of PurePortal is particularly relevant for the researchers, because high visibility on search engines shortly after a publication's publishing date leads to an increased number of citations. The table below shows examples of content in Pure that can be exhibited online on PurePortal:
| Content type | Comment |
| Research output | Bibliographic metadata can be available online, as can full-text. PurePortal can make the full-text available directly or point to a repository. Publications and all other types of output will link to Researchers, Projects, Events, Organisations, and External Persons and Organisations. |
| Activities | Researchers’ activities can be online. Activities will often be as relevant to the press or to businesses as publications. Also, researchers are usually eager to have full profiles online including activities. Activities will link to Outputs, Researchers, Projects, Organisations, and External Organisations and Persons. |
| Projects | Project can be made available on PurePortal. All data can be shown, or selected content can be withheld - funding information, for example, or other financial information such as actual spending. Projects will link to Researchers, Organisations, External parties, and Activities. |
| Events | The institution’s event can be on PurePortal. Events will link to Researchers, and to the Projects under which they sort; if any. |
| Researchers | Researchers (“Persons”) can be shown on PurePortal. The record can be shown in whole or in part. Researchers will link to outputs, Activities, Projects, Events, Organisations, and External Organisations and Persons. |
| Organisations | Organisations can be shown on PurePortal, and as with other content types that can be in whole or in part. Guests will be able to see all of an organisation’s details, including lists of the organisation’s Researchers, Publications and other Outputs, Events, Press, etc. Each item on each of these lists (for example a researcher on the list of staff member) will be an active link - in this example to the researcher’s profile page. Organisations will link to Outputs, Activities, Projects, Events, Researchers, as well as External Organisations and Persons. |
| External organisations | External Organisations will be displayed, and they link will link to Outputs, Projects, Researchers, Organisations, and External Persons. |
| External Persons | External Persons will be displayed, and they link will link to Outputs, Projects, Researchers, Organisations, and External Organisations. |
| Subject keywords | If subject keywords have been added to content in Pure, the full list of subject keywords can be browsed by guests on PurePortal. Subject keywords can be hierarchical. If they are, the full list of subject keywords will also be hierarchical on PurePortal; e.g. “Technical Sciences” > “Computer Science” > “Application Architecture”. Guests can browser a pool of subject keywords like that, and when clicking “Application Architecture” as in the example above, the guest will see a list of all content in Pure under that keyword: Not just Researchers within that field, but also Organisations (e.g. “Department of Application Architecture”), Outputs, Projects, Events, etc. This ability to quickly browse to the university’s entire pool of Researcher Profiles, Departments, Outputs, Projects, etc. is a very powerful feature in Pure and PurePortal. Please also see “Classifications”. |
Content types typically exhibited on PurePortal
Further, a PurePortal can be managed by administrators. They can set the desired URL for the portal and they can turn the portal on or off. This is done from within the Administrators user-interface. Similarly, content types can be included or excluded. It is possible to exclude Projects, for example. When excluding a specific type of content, links to that type will not be present on other types of content.
PurePortal is available in two versions: Standard PurePortal and Advanced PurePortal. A Standard PurePortal comes free with each Pure license. It can easily be replaced by an Advanced PurePortal, which can be purchased by individual quote depending on the requirements. All features described earlier in this section are available in Basic PurePortal, and in addition to those, Advanced PurePortal includes the following features:
| Feature | Description |
| Custom design | A custom design according to the institution’s own design manual or existing websites - everything can be customised, including stylesheets, colours, proportions, and design graphics. |
| Dynamic RSS feeds | Guests can subscribe to an RSS-feed for any search they make or to any specific Person, Organisation, Project, etc. This is a very useful tool for guests to keep up-to-date with a specific researcher’s work, for example, and therefore also a useful tool for the university’s efforts to disseminate research results and profiles. |
| Relation diagrams | Diagrams can be used to illustrate relations between things: Relations between a Person and other persons, for example, or relations between Persons, Organisation, Projects, etc. These are also called “Floating diagrams” because of their appearance. Any object in such a diagram is click-sensitive: Double-clicking it will take the guest to the details for the clicked object. Also, these diagrams can be altered by the guest: Another person can be dragged to the centre, for example, in to show this person’s relations instead. |
| Export options | Search results can be exported. Exports can be as XML or to PDF-, RTF- and CSV-file. When exporting publications, a reference format can also be set (HARVARD, Vancouver, MLA, APA, and others). |
| Dynamic graphs | Graphs like pie charts, bar charts, or line charts can be shown on PurePortal based on actual data in Pure. That means that the graph will be rendered per session for the individual guest on PurePortal. It can be used to show real-time status of any numerical data-set in Pure - a graph showing the number of peer-reviewed publications versus non-reviewed, for example, which is updated in real-time according to submissions in Pure. |
| Log-in by role | Advanced PurePortal can allow users in Pure to login to the Portal with their Pure-user credentials. Such identified users to can access content that they would have access to in Pure, but which is not accessible on the portal for outside guests. This is also referred to at the intranet-functionality of PurePortal. |
| Student theses | If the Student Theses module is installed, PurePortal can have functionality for submission of student theses in Pure via PurePortal. Students can identify themselves manually or be authenticated by an integration to the student administration system. They can add the required meta-data about the thesis, and attach full-text. All data submitted this way will go directly to Pure. Please also see Student Theses. |
The additional features of advanced PurePortal
Advanced PurePortal is based on an extensive technical framework, which was made for customisation. That means that any Advanced PurePortal can be customised to meet local requirements for different graphical design and additional functionality.
More information about this subject is available in the Pure4 white-paper.
Examples from Advanced PurePortal
Atira A/S
Niels Jernes Vej 10
9220 Aalborg Oest
Denmark
Phone: (+45) 96 35 61 00
VAT no. 26835526
General info: info@atira.dk
PURE support: support@pure.atira.dk
Other support: support@atira.dk
We specialize in customer- and domain-specific solutions for knowledge intensive sectors. Our area is server-side applications and integration in service oriented architectures.
Our development and project management method is SCRUM. We work in a number of European countries.